haplotype – BioQuakes

In recent years, technology has heavily impacted scientists abilities to change the world. CRISPR is a recently discovered gene editing tool that is revolutionizing the way scientists are treating patients and curing diseases. Recent research has also found that CRISPR can be used to help mice infestations in certain parts of the world (random, but cool)!

Mice infestations are a problem in many islands, and CRISPR is here to help. Scientist believe they had found a way to make an entire mice population extinct (in a few decades) by using gene editing via CRISPR. In order to understand exactly how scientists plan on doing this, it is important to understand what a “haplotype” is. A haplotype is a set of genes that are inherited by the next generation together. The “regular house mouse” has what’s called a “t-haplotype,” and it’s passed down roughly 95% of the time (a lot compared to the normal 50%). The study states that male house mice with two t-haplotype copies become infertile, and females with two t-haplotype copies will become sterile as well. As we know from AP-Biology, when an organism has two copies of some gene, it is known as homozygous- meaning it has two of the same alleles of some gene. In this case the phenotype that makes the mouse homozygous would be the altered t-haplotypes. If a mouse has two of these altered t-haplotype genes, it becomes sterile and cannot reproduce.

CRISPR plays a crucial role here – by using gene editing through CRISPR technology, scientists are able to edit the t-haplotype of the M. musculus house mouse so that next time a male M. musculus mates with a female, the offspring will become infertile. That’s right, CRIPSR can be used to completely alter and wipe an an entire M. musculus population over the course of a few years. By using computer technology, scientists predict that by adding just 256 “altered” mice to a certain island population of mice, an island of 200,000 mice can be fully wiped out within about 25 years.

Scientists are hopeful, optimistic, and invested in CRISPR technology. The “25 years later” prediction is a long time to wait, and scientists hope that sometime in the future, CRISPR will be able to work faster, allowing problems to be solved more quickly and more efficiently. I think that this study is an important part of CRISPR potential, and it makes me very curious to see what CRISPR has in store for the future, and what other kinds of animal related issues it can help solve.

Neanderthals, from roughly 40,000 years ago, have had an impact on protecting people, that contain a specific haplotype on chromosome 12, from having severe symptoms due to the Sars-COV-2 virus. Researchers conducted a study that showed a ~22% decrease in severe illness connected to a gene inherited from Neanderthals.

Neanderthals evolved in western Eurasia -the largest continental area consisting of Europe and Asia- about half a million years ago, living mostly separated from early modern humans in Africa. Neanderthals likely developed certain genes allowing them to fight off infectious diseases during the time of their existence. Due to natural selection, which is when animals with the most favorable traits for survival will survive to reproduce and pass on their genes, these neanderthals were able to evolve and pass on the favorable gene allowing modern humans today to fight off Sars-Cov-2. Through natural selection, the haplotype, on chromosome 12, linked to protection against certain viruses has been passed on. This specific haplotype has helped people during the current pandemic to stay out of the hospital.

This study discovered that this specific haplotype on chromosome 12 contains three helpful genes: OAS1, OAS2, and OAS3. These genes encode for a specific enzyme called oligoadenylate synthetase. As we learned in AP Biology, enzymes are created by free ribosomes in the cytosol; the ribosomes manufacture proteins(a chain of amino acids), such as enzymes for cellular reactions. The oligoadenylate chain triggers ribonuclease L. The ribonuclease L, also known as RNase L, is only activated when a viral infection enters the body; it breaks down the viral RNA molecules, leading to autophagy. This enzyme breaks down the viral Sars-Cov-2 RNA and slows/stops the spread of the virus in the body.

Many people have been trying to find ways to move forward from this pandemic and return to our previous form of normal life. Scientists may be able to use this information about this specific haplotype on chromosome 12 with gene editing technologies, such as CRISPR, to help individuals slow and later stop the spread of COVID-19. Research like this may be one way to be able to return to a normal life-style and keep people out of hospitals from COVID-19. As we continue on in AP Biology this year, I look forward to learning about the idea of genes and gene editing as I will have more knowledge to touch back on this research study. Do you think that this is a possible solution to the COVID-19 pandemic?

BioQuakes

AP Biology class blog for discussing current research in Biology

Tag: haplotype

CRISPR: how one tool can change an entire generation (of invasive mice).

Are Genes Inherited from Neanderthals Protecting People Against COVID-19?

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